DELIMITER $$
CREATE FUNCTION levenshtein( s1 VARCHAR(255), s2 VARCHAR(255) ) 
  RETURNS INT 
  DETERMINISTIC 
  BEGIN 
    DECLARE s1_len, s2_len, i, j, c, c_temp, cost INT; 
    DECLARE s1_char CHAR; 
    -- max strlen=255 
    DECLARE cv0, cv1 VARBINARY(256); 
    SET s1_len = CHAR_LENGTH(s1), s2_len = CHAR_LENGTH(s2), cv1 = 0x00, j = 1, i = 1, c = 0; 
    IF s1 = s2 THEN 
      RETURN 0; 
    ELSEIF s1_len = 0 THEN 
      RETURN s2_len; 
    ELSEIF s2_len = 0 THEN 
      RETURN s1_len; 
    ELSE 
      WHILE j <= s2_len DO 
        SET cv1 = CONCAT(cv1, UNHEX(HEX(j))), j = j + 1; 
      END WHILE; 
      WHILE i <= s1_len DO 
        SET s1_char = SUBSTRING(s1, i, 1), c = i, cv0 = UNHEX(HEX(i)), j = 1; 
        WHILE j <= s2_len DO 
          SET c = c + 1; 
          IF s1_char = SUBSTRING(s2, j, 1) THEN  
            SET cost = 0; ELSE SET cost = 1; 
          END IF; 
          SET c_temp = CONV(HEX(SUBSTRING(cv1, j, 1)), 16, 10) + cost; 
          IF c > c_temp THEN SET c = c_temp; END IF; 
            SET c_temp = CONV(HEX(SUBSTRING(cv1, j+1, 1)), 16, 10) + 1; 
            IF c > c_temp THEN  
              SET c = c_temp;  
            END IF; 
            SET cv0 = CONCAT(cv0, UNHEX(HEX(c))), j = j + 1; 
        END WHILE; 
        SET cv1 = cv0, i = i + 1; 
      END WHILE; 
    END IF; 
    RETURN c; 
  END$$
  
DELIMITER $$
CREATE FUNCTION levenshtein_ratio( s1 VARCHAR(255), s2 VARCHAR(255) ) 
  RETURNS INT 
  DETERMINISTIC 
  BEGIN 
    DECLARE s1_len, s2_len, max_len INT; 
    SET s1_len = LENGTH(s1), s2_len = LENGTH(s2); 
    IF s1_len > s2_len THEN  
      SET max_len = s1_len;  
    ELSE  
      SET max_len = s2_len;  
    END IF; 
    RETURN ROUND((1 - LEVENSHTEIN(s1, s2) / max_len) * 100); 
  END$$
  
CREATE INDEX project_id_idx ON hw2_order (project_id);
/* CREATE INDEX experiment_name_idx ON hw2_order (experiment_name); */
CREATE INDEX fixative_id_list_idx ON hw2_order (fixative_id_list);
CREATE INDEX fixative_custom_idx ON hw2_order (fixative_custom);
CREATE INDEX received_in_id_list_idx ON hw2_order (received_in_id_list);
CREATE INDEX received_in_custom_idx ON hw2_order (received_in_custom);
CREATE INDEX additional_info_idx ON hw2_order (additional_info);
CREATE INDEX species_id_list_idx ON hw2_order (species_id_list);
CREATE INDEX species_custom_idx ON hw2_order (species_custom);
CREATE INDEX bio_system_id_list_idx ON hw2_order (bio_system_id_list);
CREATE INDEX bio_system_custom_idx ON hw2_order (bio_system_custom);
CREATE INDEX mouse_strain_id_list_idx ON hw2_order (mouse_strain_id_list);
CREATE INDEX mouse_strain_custom_idx ON hw2_order (mouse_strain_custom);
CREATE INDEX gemm_idx ON hw2_order (gemm);
CREATE INDEX gender_idx ON hw2_order (gender);
CREATE INDEX experiment_type_id_list_idx ON hw2_order (experiment_type_id_list);
CREATE INDEX experiment_type_custom_idx ON hw2_order (experiment_type_custom);
CREATE INDEX xenograft_type_id_list_idx ON hw2_order (xenograft_type_id_list);
CREATE INDEX promoters_idx ON hw2_order (promoters);
CREATE INDEX reporters_idx ON hw2_order (reporters);
CREATE INDEX mpath_icd10_codes_idx ON hw2_order (mpath_icd10_codes);

CREATE INDEX stain_code_idx ON hw2_stain (stain_code);
CREATE INDEX ihc_antigen_name_idx ON hw2_ihc_antigen (name);
CREATE INDEX ihc_stain_custom_idx ON hw2_ihc_stain (custom_antigen);
CREATE INDEX special_stain_idx ON hw2_special_stain (stain_type);
CREATE INDEX special_stain_custom_idx ON hw2_special_stain (stain_type_custom);
